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SciML / SciMLBenchmarks.jl

Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R
https://docs.sciml.ai/SciMLBenchmarksOutput/stable/
MIT License
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Benchmarking with Gillespy2 #309

Open yewalenikhil65 opened 3 years ago

yewalenikhil65 commented 3 years ago

Opening here a thread to keep track of progress for benchmarking with GillesPy2 and Gillepy2julia. (Have some health issues so will be little slow for now)

Bdw, has anybody tried using julia wrapper of gillespy2?? I had following issue https://github.com/StochSS/GillesPy2lia/issues/1

ChrisRackauckas commented 3 years ago

https://github.com/StochSS/GillesPy2lia/blob/main/src/GillesPy2.jl

It looks like it's just an extremely thin wrapper.

yewalenikhil65 commented 3 years ago

And time span restricted by default, 0 to 100. I found it little 😬