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SciML / diffeqpy

Solving differential equations in Python using DifferentialEquations.jl and the SciML Scientific Machine Learning organization
MIT License
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LoadError: Artifact "OpenSpecFun" was not found by looking in the paths #131

Closed mustafaozen closed 7 months ago

mustafaozen commented 7 months ago

Describe the bug 🐞 While trying to import diffeqpy library

from diffeqpy import de

getting the following error:

ERROR: LoadError: Artifact "OpenSpecFun" was not found by looking in the paths:
  ~/.julia/artifacts/b822d3e3235af3b5f3f3a91d13cc8f3f036630f8
  /Applications/Julia-1.9.app/Contents/Resources/julia/local/share/julia/artifacts/b822d3e3235af3b5f3f3a91d13cc8f3f036630f8
  /Applications/Julia-1.9.app/Contents/Resources/julia/share/julia/artifacts/b822d3e3235af3b5f3f3a91d13cc8f3f036630f8
Try `using Pkg; Pkg.instantiate()` to re-install all missing resources if the artifact is part of a package or call `Pkg.ensure_artifact_installed` (https://pkgdocs.julialang.org/v1/api/#Pkg.Artifacts.ensure_artifact_installed) if not.

Full Stacktrace is provided below.

Expected behavior I expected the library to load without any error

Minimal Reproducible Example 👇

conda create --name diffeqenv python=3.10 conda activate diffeqenv pip install diffeqpy python

from diffeqpy import de

with julia version 1.9.4

Error & Stacktrace ⚠️

[ Info: Precompiling DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa]
ERROR: LoadError: Artifact "OpenSpecFun" was not found by looking in the paths:
  ~/.julia/artifacts/b822d3e3235af3b5f3f3a91d13cc8f3f036630f8
  /Applications/Julia-1.9.app/Contents/Resources/julia/local/share/julia/artifacts/b822d3e3235af3b5f3f3a91d13cc8f3f036630f8
  /Applications/Julia-1.9.app/Contents/Resources/julia/share/julia/artifacts/b822d3e3235af3b5f3f3a91d13cc8f3f036630f8
Try `using Pkg; Pkg.instantiate()` to re-install all missing resources if the artifact is part of a package or call `Pkg.ensure_artifact_installed` (https://pkgdocs.julialang.org/v1/api/#Pkg.Artifacts.ensure_artifact_installed) if not.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] _artifact_str(__module__::Module, artifacts_toml::String, name::SubString{String}, path_tail::String, artifact_dict::Dict{String, Any}, hash::Base.SHA1, platform::Base.BinaryPlatforms.Platform, lazyartifacts::Any)
    @ Artifacts /Applications/Julia-1.9.app/Contents/Resources/julia/share/julia/stdlib/v1.9/Artifacts/src/Artifacts.jl:569
  [3] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Base ./essentials.jl:819
  [4] invokelatest(::Any, ::Any, ::Vararg{Any})
    @ Base ./essentials.jl:816
  [5] macro expansion
    @ /Applications/Julia-1.9.app/Contents/Resources/julia/share/julia/stdlib/v1.9/Artifacts/src/Artifacts.jl:703 [inlined]
  [6] find_artifact_dir()
    @ OpenSpecFun_jll ~/.julia/packages/JLLWrappers/pG9bm/src/wrapper_generators.jl:17
  [7] top-level scope
    @ ~/.julia/packages/JLLWrappers/pG9bm/src/wrapper_generators.jl:21
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:457
  [9] top-level scope
    @ ~/.julia/packages/JLLWrappers/pG9bm/src/toplevel_generators.jl:192
 [10] include
    @ ./Base.jl:457 [inlined]
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2049
 [12] top-level scope
    @ stdin:3
in expression starting at /Users/mozen/.julia/packages/OpenSpecFun_jll/1Zaof/src/wrappers/x86_64-apple-darwin-libgfortran4.jl:5
in expression starting at /Users/mozen/.julia/packages/OpenSpecFun_jll/1Zaof/src/OpenSpecFun_jll.jl:2
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile OpenSpecFun_jll [efe28fd5-8261-553b-a9e1-b2916fc3738e] to "/Users/mozen/.julia/compiled/v1.9/OpenSpecFun_jll/jl_mLmFmh".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2294
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] include
    @ ./Base.jl:457 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2049
 [11] top-level scope
    @ stdin:3
in expression starting at /Users/mozen/.julia/packages/SpecialFunctions/QH8rV/src/SpecialFunctions.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] to "/Users/mozen/.julia/compiled/v1.9/SpecialFunctions/jl_QjkTCI".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2294
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] include
    @ ./Base.jl:457 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2049
 [11] top-level scope
    @ stdin:3
in expression starting at /Users/mozen/.julia/packages/ForwardDiff/PcZ48/src/ForwardDiff.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile ForwardDiff [f6369f11-7733-5829-9624-2563aa707210] to "/Users/mozen/.julia/compiled/v1.9/ForwardDiff/jl_nGXIAA".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2294
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] top-level scope
    @ ~/.julia/packages/DiffEqBase/NYLhl/src/DiffEqBase.jl:34
 [10] top-level scope
    @ ~/.julia/packages/DiffEqBase/NYLhl/src/DiffEqBase.jl:9
 [11] include
    @ ./Base.jl:457 [inlined]
 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2049
 [13] top-level scope
    @ stdin:3
in expression starting at /Users/mozen/.julia/packages/DiffEqBase/NYLhl/src/DiffEqBase.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] to "/Users/mozen/.julia/compiled/v1.9/DiffEqBase/jl_zaoPkc".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2294
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] include
    @ ./Base.jl:457 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2049
 [11] top-level scope
    @ stdin:3
in expression starting at /Users/mozen/.julia/packages/DifferentialEquations/Tu7HS/src/DifferentialEquations.jl:1
in expression starting at stdin:3
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/mozen/opt/anaconda3/envs/diffeqenv/lib/python3.10/site-packages/diffeqpy/de.py", line 3, in <module>
    de, _ = load_julia_packages("DifferentialEquations, ModelingToolkit")
  File "/Users/mozen/opt/anaconda3/envs/diffeqenv/lib/python3.10/site-packages/diffeqpy/__init__.py", line 85, in load_julia_packages
    return Main.seval(f"import Pkg; Pkg.activate(\"diffeqpy\", shared=true); import {names}; {names}")
  File "/Users/mozen/.julia/packages/PythonCall/wXfah/src/jlwrap/module.jl", line 25, in seval
    return self._jl_callmethod($(pyjl_methodnum(pyjlmodule_seval)), expr)
juliacall.JuliaError: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/Users/mozen/.julia/compiled/v1.9/DifferentialEquations/jl_b7uxcz".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2294
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] eval
    @ ./boot.jl:370 [inlined]
 [10] eval
    @ ./Base.jl:68 [inlined]
 [11] pyjlmodule_seval(self::Module, expr::Py)
    @ PythonCall ~/.julia/packages/PythonCall/wXfah/src/jlwrap/module.jl:13
 [12] _pyjl_callmethod(f::Any, self_::Ptr{PythonCall.C.PyObject}, args_::Ptr{PythonCall.C.PyObject}, nargs::Int64)
    @ PythonCall ~/.julia/packages/PythonCall/wXfah/src/jlwrap/base.jl:62
 [13] _pyjl_callmethod(o::Ptr{PythonCall.C.PyObject}, args::Ptr{PythonCall.C.PyObject})
    @ PythonCall.C ~/.julia/packages/PythonCall/wXfah/src/cpython/jlwrap.jl:47

Environment (please complete the following information):

Status `~/.julia/environments/v1.9/Project.toml`
  [336ed68f] CSV v0.10.11
  [479239e8] Catalyst v13.5.1
  [a93c6f00] DataFrames v1.6.1
  [0c46a032] DifferentialEquations v7.11.0
  [23fbe1c1] Latexify v0.16.1
  [bcdb8e00] Metaheuristics v3.3.3
⌃ [961ee093] ModelingToolkit v8.72.2
  [7f7a1694] Optimization v3.19.3
  [3aafef2f] OptimizationMetaheuristics v0.1.3
  [36348300] OptimizationOptimJL v0.1.13
  [42dfb2eb] OptimizationOptimisers v0.1.6
⌃ [1dea7af3] OrdinaryDiffEq v6.58.1
  [91a5bcdd] Plots v1.39.0
  [b4db0fb7] ReactionNetworkImporters v0.14.0
  [86080e66] SBMLToolkit v0.1.25
⌃ [1ed8b502] SciMLSensitivity v7.46.0
  [37e2e46d] LinearAlgebra
Info Packages marked with ⌃ have new versions available and may be upgradable.
Status `~/.julia/environments/v1.9/Manifest.toml`
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 ⌅ [c3fe647b] AbstractAlgebra v0.32.5
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 ⌃ [d1d4a3ce] BitFlags v0.1.7
   [62783981] BitTwiddlingConvenienceFunctions v0.1.5
 ⌃ [764a87c0] BoundaryValueDiffEq v5.3.0
 ⌅ [fa961155] CEnum v0.4.2
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   [7057c7e9] Cassette v0.3.12
   [479239e8] Catalyst v13.5.1
 ⌃ [082447d4] ChainRules v1.57.0
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   [fb6a15b2] CloseOpenIntervals v0.1.12
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   [c3611d14] ColorVectorSpace v0.10.0
   [5ae59095] Colors v0.12.10
   [861a8166] Combinatorics v1.0.2
   [a80b9123] CommonMark v0.8.12
   [38540f10] CommonSolve v0.2.4
   [bbf7d656] CommonSubexpressions v0.3.0
   [34da2185] Compat v4.10.0
   [b152e2b5] CompositeTypes v0.1.3
   [a33af91c] CompositionsBase v0.1.2
   [2569d6c7] ConcreteStructs v0.2.3
   [f0e56b4a] ConcurrentUtilities v2.3.0
   [88cd18e8] ConsoleProgressMonitor v0.1.2
   [187b0558] ConstructionBase v1.5.4
   [d38c429a] Contour v0.6.2
   [adafc99b] CpuId v0.3.1
   [a8cc5b0e] Crayons v4.1.1
   [9a962f9c] DataAPI v1.15.0
   [a93c6f00] DataFrames v1.6.1
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   [e2d170a0] DataValueInterfaces v1.0.0
   [bcd4f6db] DelayDiffEq v5.43.1
   [8bb1440f] DelimitedFiles v1.9.1
 ⌃ [2b5f629d] DiffEqBase v6.138.1
 ⌃ [459566f4] DiffEqCallbacks v2.33.1
   [77a26b50] DiffEqNoiseProcess v5.19.0
   [163ba53b] DiffResults v1.1.0
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   [0c46a032] DifferentialEquations v7.11.0
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   [31c24e10] Distributions v0.25.103
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 ⌃ [08abe8d2] PrettyTables v2.2.8
 ⌃ [27ebfcd6] Primes v0.5.4
   [33c8b6b6] ProgressLogging v0.1.4
   [92933f4c] ProgressMeter v1.9.0
   [1fd47b50] QuadGK v2.9.1
 ⌃ [8a4e6c94] QuasiMonteCarlo v0.3.2
   [74087812] Random123 v1.6.1
   [fb686558] RandomExtensions v0.4.4
   [e6cf234a] RandomNumbers v1.5.3
   [b4db0fb7] ReactionNetworkImporters v0.14.0
   [c1ae055f] RealDot v0.1.0
   [3cdcf5f2] RecipesBase v1.3.4
   [01d81517] RecipesPipeline v0.6.12
   [731186ca] RecursiveArrayTools v2.38.10
 ⌃ [f2c3362d] RecursiveFactorization v0.2.20
   [189a3867] Reexport v1.2.2
   [05181044] RelocatableFolders v1.0.1
   [ae029012] Requires v1.3.0
   [ae5879a3] ResettableStacks v1.1.1
   [37e2e3b7] ReverseDiff v1.15.1
   [79098fc4] Rmath v0.7.1
   [7e49a35a] RuntimeGeneratedFunctions v0.5.12
 ⌃ [e5567a89] SBML v1.5.0
   [86080e66] SBMLToolkit v0.1.25
   [fdea26ae] SIMD v3.4.6
   [94e857df] SIMDTypes v0.1.0
   [476501e8] SLEEFPirates v0.6.42
 ⌃ [0bca4576] SciMLBase v2.8.0
   [e9a6253c] SciMLNLSolve v0.1.9
   [c0aeaf25] SciMLOperators v0.3.7
 ⌃ [1ed8b502] SciMLSensitivity v7.46.0
   [6c6a2e73] Scratch v1.2.1
   [eb7571c6] SearchSpaces v0.2.0
   [91c51154] SentinelArrays v1.4.1
   [efcf1570] Setfield v1.1.1
   [992d4aef] Showoff v1.0.3
   [777ac1f9] SimpleBufferStream v1.1.0
   [727e6d20] SimpleNonlinearSolve v0.1.25
   [699a6c99] SimpleTraits v0.9.4
   [ce78b400] SimpleUnPack v1.1.0
   [66db9d55] SnoopPrecompile v1.0.3
   [ed01d8cd] Sobol v1.5.0
   [a2af1166] SortingAlgorithms v1.2.0
 ⌃ [47a9eef4] SparseDiffTools v2.11.0
   [dc90abb0] SparseInverseSubset v0.1.1
   [e56a9233] Sparspak v0.3.9
   [276daf66] SpecialFunctions v2.3.1
   [aedffcd0] Static v0.8.8
   [0d7ed370] StaticArrayInterface v1.4.1
 ⌃ [90137ffa] StaticArrays v1.6.5
   [1e83bf80] StaticArraysCore v1.4.2
   [82ae8749] StatsAPI v1.7.0
   [2913bbd2] StatsBase v0.34.2
   [4c63d2b9] StatsFuns v1.3.0
 ⌅ [9672c7b4] SteadyStateDiffEq v1.16.1
   [789caeaf] StochasticDiffEq v6.63.2
 ⌅ [7792a7ef] StrideArraysCore v0.4.17
   [892a3eda] StringManipulation v0.3.4
   [09ab397b] StructArrays v0.6.16
   [53d494c1] StructIO v0.3.0
   [c3572dad] Sundials v4.20.1
   [2efcf032] SymbolicIndexingInterface v0.2.2
   [d1185830] SymbolicUtils v1.4.0
   [0c5d862f] Symbolics v5.10.0
   [3783bdb8] TableTraits v1.0.1
   [bd369af6] Tables v1.11.1
   [62fd8b95] TensorCore v0.1.1
   [5d786b92] TerminalLoggers v0.1.7
   [8290d209] ThreadingUtilities v0.5.2
   [a759f4b9] TimerOutputs v0.5.23
   [0796e94c] Tokenize v0.5.26
 ⌃ [9f7883ad] Tracker v0.2.28
   [3bb67fe8] TranscodingStreams v0.10.2
   [a2a6695c] TreeViews v0.3.0
   [d5829a12] TriangularSolve v0.1.20
   [410a4b4d] Tricks v0.1.8
   [781d530d] TruncatedStacktraces v1.4.0
   [5c2747f8] URIs v1.5.1
   [3a884ed6] UnPack v1.0.2
   [1cfade01] UnicodeFun v0.4.1
 ⌃ [1986cc42] Unitful v1.17.0
   [45397f5d] UnitfulLatexify v1.6.3
   [a7c27f48] Unityper v0.1.5
   [013be700] UnsafeAtomics v0.2.1
   [d80eeb9a] UnsafeAtomicsLLVM v0.1.3
   [41fe7b60] Unzip v0.2.0
   [3d5dd08c] VectorizationBase v0.21.64
   [19fa3120] VertexSafeGraphs v0.2.0
   [ea10d353] WeakRefStrings v1.4.2
   [76eceee3] WorkerUtilities v1.6.1
   [e88e6eb3] Zygote v0.6.67
   [700de1a5] ZygoteRules v0.2.4
→  [6e34b625] Bzip2_jll v1.0.8+0
→  [83423d85] Cairo_jll v1.16.1+1
→⌅ [7cc45869] Enzyme_jll v0.0.89+0
   [2702e6a9] EpollShim_jll v0.0.20230411+0
→  [2e619515] Expat_jll v2.5.0+0
→  [b22a6f82] FFMPEG_jll v4.4.4+1
→  [a3f928ae] Fontconfig_jll v2.13.93+0
→  [d7e528f0] FreeType2_jll v2.13.1+0
→  [559328eb] FriBidi_jll v1.0.10+0
→  [0656b61e] GLFW_jll v3.3.8+0
→  [d2c73de3] GR_jll v0.72.10+0
→  [78b55507] Gettext_jll v0.21.0+0
→  [7746bdde] Glib_jll v2.76.5+0
→  [3b182d85] Graphite2_jll v1.3.14+0
→  [2e76f6c2] HarfBuzz_jll v2.8.1+1
→  [1d5cc7b8] IntelOpenMP_jll v2023.2.0+0
→  [aacddb02] JpegTurbo_jll v2.1.91+0
→  [c1c5ebd0] LAME_jll v3.100.1+0
→  [88015f11] LERC_jll v3.0.0+1
→⌃ [dad2f222] LLVMExtra_jll v0.0.27+0
→  [1d63c593] LLVMOpenMP_jll v15.0.4+0
→  [dd4b983a] LZO_jll v2.10.1+0
→⌅ [e9f186c6] Libffi_jll v3.2.2+1
→  [d4300ac3] Libgcrypt_jll v1.8.7+0
   [7e76a0d4] Libglvnd_jll v1.6.0+0
→  [7add5ba3] Libgpg_error_jll v1.42.0+0
→  [94ce4f54] Libiconv_jll v1.17.0+0
   [4b2f31a3] Libmount_jll v2.35.0+0
→  [89763e89] Libtiff_jll v4.5.1+1
   [38a345b3] Libuuid_jll v2.36.0+0
   [856f044c] MKL_jll v2023.2.0+0
→  [e7412a2a] Ogg_jll v1.3.5+1
→  [458c3c95] OpenSSL_jll v3.0.12+0
→  [efe28fd5] OpenSpecFun_jll v0.5.5+0
→  [91d4177d] Opus_jll v1.3.2+0
→  [30392449] Pixman_jll v0.42.2+0
→  [c0090381] Qt6Base_jll v6.5.3+1
→  [f50d1b31] Rmath_jll v0.4.0+0
→  [bb12108a] SBML_jll v5.20.1+0
→⌅ [fb77eaff] Sundials_jll v5.2.1+0
→  [a44049a8] Vulkan_Loader_jll v1.3.243+0
   [a2964d1f] Wayland_jll v1.21.0+1
   [2381bf8a] Wayland_protocols_jll v1.25.0+0
→⌃ [02c8fc9c] XML2_jll v2.11.5+0
→  [aed1982a] XSLT_jll v1.1.34+0
→  [ffd25f8a] XZ_jll v5.4.5+0
   [f67eecfb] Xorg_libICE_jll v1.0.10+1
   [c834827a] Xorg_libSM_jll v1.2.3+0
   [4f6342f7] Xorg_libX11_jll v1.8.6+0
   [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
   [935fb764] Xorg_libXcursor_jll v1.2.0+4
   [a3789734] Xorg_libXdmcp_jll v1.1.4+0
   [1082639a] Xorg_libXext_jll v1.3.4+4
   [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
   [a51aa0fd] Xorg_libXi_jll v1.7.10+4
   [d1454406] Xorg_libXinerama_jll v1.1.4+4
   [ec84b674] Xorg_libXrandr_jll v1.5.2+4
   [ea2f1a96] Xorg_libXrender_jll v0.9.10+4
   [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
   [c7cfdc94] Xorg_libxcb_jll v1.15.0+0
   [cc61e674] Xorg_libxkbfile_jll v1.1.2+0
   [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
   [12413925] Xorg_xcb_util_image_jll v0.4.0+1
   [2def613f] Xorg_xcb_util_jll v0.4.0+1
   [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
   [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
   [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
   [35661453] Xorg_xkbcomp_jll v1.4.6+0
   [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
   [c5fb5394] Xorg_xtrans_jll v1.5.0+0
→  [3161d3a3] Zstd_jll v1.5.5+0
   [35ca27e7] eudev_jll v3.2.9+0
→⌅ [214eeab7] fzf_jll v0.35.1+0
→  [1a1c6b14] gperf_jll v3.1.1+0
→  [a4ae2306] libaom_jll v3.4.0+0
→  [0ac62f75] libass_jll v0.15.1+0
   [2db6ffa8] libevdev_jll v1.11.0+0
→  [f638f0a6] libfdk_aac_jll v2.0.2+0
   [36db933b] libinput_jll v1.18.0+0
→  [b53b4c65] libpng_jll v1.6.38+0
→  [f27f6e37] libvorbis_jll v1.3.7+1
   [009596ad] mtdev_jll v1.1.6+0
→  [1270edf5] x264_jll v2021.5.5+0
→  [dfaa095f] x265_jll v3.5.0+0
   [d8fb68d0] xkbcommon_jll v1.4.1+1
   [0dad84c5] ArgTools v1.1.1
   [56f22d72] Artifacts
   [2a0f44e3] Base64
   [ade2ca70] Dates
   [8ba89e20] Distributed
   [f43a241f] Downloads v1.6.0
   [7b1f6079] FileWatching
   [9fa8497b] Future
   [b77e0a4c] InteractiveUtils
   [4af54fe1] LazyArtifacts
   [b27032c2] LibCURL v0.6.3
   [76f85450] LibGit2
   [8f399da3] Libdl
   [37e2e46d] LinearAlgebra
   [56ddb016] Logging
   [d6f4376e] Markdown
   [a63ad114] Mmap
   [ca575930] NetworkOptions v1.2.0
   [44cfe95a] Pkg v1.9.2
   [de0858da] Printf
   [3fa0cd96] REPL
   [9a3f8284] Random
   [ea8e919c] SHA v0.7.0
   [9e88b42a] Serialization
   [1a1011a3] SharedArrays
   [6462fe0b] Sockets
   [2f01184e] SparseArrays
   [10745b16] Statistics v1.9.0
   [4607b0f0] SuiteSparse
   [fa267f1f] TOML v1.0.3
   [a4e569a6] Tar v1.10.0
   [8dfed614] Test
   [cf7118a7] UUIDs
   [4ec0a83e] Unicode
   [e66e0078] CompilerSupportLibraries_jll v1.0.5+0
   [deac9b47] LibCURL_jll v7.84.0+0
   [29816b5a] LibSSH2_jll v1.10.2+0
   [c8ffd9c3] MbedTLS_jll v2.28.2+0
   [14a3606d] MozillaCACerts_jll v2022.10.11
   [4536629a] OpenBLAS_jll v0.3.21+4
   [05823500] OpenLibm_jll v0.8.1+0
   [efcefdf7] PCRE2_jll v10.42.0+0
   [bea87d4a] SuiteSparse_jll v5.10.1+6
   [83775a58] Zlib_jll v1.2.13+0
   [8e850b90] libblastrampoline_jll v5.8.0+0
   [8e850ede] nghttp2_jll v1.48.0+0
   [3f19e933] p7zip_jll v17.4.0+0
Info Packages marked with → are not downloaded, use `instantiate` to download
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: macOS (x86_64-apple-darwin22.4.0)
  CPU: 8 × Apple M1 Pro
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-14.0.6 (ORCJIT, westmere)
  Threads: 1 on 8 virtual cores
ChrisRackauckas commented 7 months ago 
  [336ed68f] CSV v0.10.11
  [479239e8] Catalyst v13.5.1
  [a93c6f00] DataFrames v1.6.1
  [0c46a032] DifferentialEquations v7.11.0
  [23fbe1c1] Latexify v0.16.1
  [bcdb8e00] Metaheuristics v3.3.3
⌃ [961ee093] ModelingToolkit v8.72.2
  [7f7a1694] Optimization v3.19.3
  [3aafef2f] OptimizationMetaheuristics v0.1.3
  [36348300] OptimizationOptimJL v0.1.13
  [42dfb2eb] OptimizationOptimisers v0.1.6
⌃ [1dea7af3] OrdinaryDiffEq v6.58.1
  [91a5bcdd] Plots v1.39.0
  [b4db0fb7] ReactionNetworkImporters v0.14.0
  [86080e66] SBMLToolkit v0.1.25
⌃ [1ed8b502] SciMLSensitivity v7.46.0
  [37e2e46d] LinearAlgebra

Your environment has a bunch of things that diffeqpy doesn't put there, so I presume instead of using the version of Julia provided this is a custom setup? Is this using the Homebrew version?

mkitti commented 7 months ago

I do see an Anaconda environment here as well.

I'm not sure if we support it but there is a conda-forge build of OpenSpecFun.

https://anaconda.org/conda-forge/openspecfun

mustafaozen commented 7 months ago

Thanks for the response! Updating Julia resolved the issue