Degraded PP load times in later Iris versions

[wjbenfold]

📰 Custom Issue

Iris has got slower at loading pp files into cubes (though not noticeably in realising them). There was a massive slowdown in realisation in the default-current environment, but that seems to have resolved in default-next.

x-axis is number of time steps in the pp file y-axis is time in seconds

[wjbenfold]

pstats from profile

   ncalls  tottime  percall  cumtime  percall filename:lineno(function)
        1    0.000    0.000  512.351  512.351 profile:0(main())
      3/1    0.000    0.000  512.350  512.350 :0(exec)
        1    0.004    0.004  512.350  512.350 <string>:1(<module>)
        1    0.000    0.000  512.347  512.347 profiler.py:9(main)
    42645    0.240    0.000  375.892    0.009 .../lib/python3.6/site-packages/iris/_data_manager.py:192(data)
    34119    0.095    0.000  375.784    0.011 .../lib/python3.6/site-packages/iris/_lazy_data.py:233(as_concrete_data)
        1    0.000    0.000  375.537  375.537 .../lib/python3.6/site-packages/iris/cube.py:2067(data)
        1    0.007    0.007  375.514  375.514 .../lib/python3.6/site-packages/iris/_lazy_data.py:199(_co_realise_lazy_arrays)
        1    0.001    0.001  375.507  375.507 .../lib/python3.6/site-packages/dask/base.py:506(compute)
        1    0.004    0.004  365.301  365.301 .../lib/python3.6/site-packages/dask/base.py:321(collections_to_dsk)
        1    0.020    0.020  365.149  365.149 .../lib/python3.6/site-packages/dask/array/optimization.py:24(optimize)
        1    0.171    0.171  362.583  362.583 .../lib/python3.6/site-packages/dask/highlevelgraph.py:801(cull)
    12795   48.627    0.004  287.514    0.022 .../lib/python3.6/_collections_abc.py:712(_from_iterable)
     4265    0.029    0.000  192.411    0.045 .../lib/python3.6/_collections_abc.py:474(__and__)
    12793   52.623    0.004  192.303    0.015 .../lib/python3.6/_collections_abc.py:477(<genexpr>)
 36376184   90.005    0.000  139.714    0.000 .../lib/python3.6/_collections_abc.py:716(__contains__)
        1    0.064    0.064  136.809  136.809 .../lib/python3.6/site-packages/iris/__init__.py:279(load)
        1    1.554    1.554   96.829   96.829 .../lib/python3.6/site-packages/dask/highlevelgraph.py:687(get_all_external_keys)
     4265    0.040    0.000   95.219    0.022 .../lib/python3.6/_collections_abc.py:488(__or__)
        1    0.000    0.000   91.725   91.725 .../lib/python3.6/site-packages/iris/cube.py:144(merged)

[wjbenfold]

pstats from profile for default-next for comparison

   ncalls  tottime  percall  cumtime  percall filename:lineno(function)
        1    0.000    0.000  143.879  143.879 profile:0(main())
   1066/1    0.039    0.000  143.878  143.878 :0(exec)
    288/1    0.005    0.000  143.878  143.878 <string>:1(<module>)
        1    0.000    0.000  143.874  143.874 profiler.py:9(main)
        1    0.044    0.044  131.555  131.555 .../lib/python3.7/site-packages/iris/__init__.py:278(load)
        1    0.000    0.000   84.038   84.038 .../lib/python3.7/site-packages/iris/cube.py:142(merged)
        1    0.000    0.000   84.038   84.038 .../lib/python3.7/site-packages/iris/cube.py:155(<listcomp>)
        1    0.003    0.003   84.038   84.038 .../lib/python3.7/site-packages/iris/cube.py:84(merged)
        1    0.063    0.063   84.036   84.036 .../lib/python3.7/site-packages/iris/cube.py:408(merge)
     4263    0.101    0.000   81.865    0.019 .../lib/python3.7/site-packages/iris/_merge.py:1330(register)
     4264    0.948    0.000   71.788    0.017 .../lib/python3.7/site-packages/iris/_merge.py:1758(_extract_coord_payload)
    34112    0.325    0.000   64.963    0.002 .../lib/python3.7/site-packages/iris/cube.py:1411(coord_dims)
    34112    0.426    0.000   64.546    0.002 .../lib/python3.7/site-packages/iris/cube.py:1785(coord)
    34112    0.817    0.000   64.002    0.002 .../lib/python3.7/site-packages/iris/cube.py:1585(coords)
    34112    0.800    0.000   57.509    0.002 .../lib/python3.7/site-packages/iris/cube.py:1742(<listcomp>)
   230250    1.131    0.000   56.270    0.000 .../lib/python3.7/site-packages/iris/common/metadata.py:1253(__eq__)
   230250    0.892    0.000   54.801    0.000 .../lib/python3.7/site-packages/iris/common/metadata.py:910(__eq__)
   230250    3.408    0.000   53.909    0.000 .../lib/python3.7/site-packages/iris/common/metadata.py:159(__eq__)
        1    0.000    0.000   47.473   47.473 .../lib/python3.7/site-packages/iris/__init__.py:265(_load_collection)
        1    0.021    0.021   41.664   41.664 .../lib/python3.7/site-packages/iris/cube.py:105(from_cubes)

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