Science-for-Nature-and-People / BibScan

R package to batch download PDFs from a Web of Science search
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parsing failure #18

Closed swood-ecology closed 6 years ago

swood-ecology commented 6 years ago

I got the below error when trying to run the main function. Attached are the files I used.

article_pdf_download(infilepath='~/Documents/Temporary/Lesley', colandr=screened_abstracts)

Converting your isi collection into a bibliographic dataframe

Articles extracted   100 
Articles extracted   200 
Articles extracted   300 
Articles extracted   326 
Done!

Genereting affiliation field tag AU_UN from C1:  Done!

Converting your isi collection into a bibliographic dataframe

Articles extracted   43 
Done!

Genereting affiliation field tag AU_UN from C1:  Done!

Warning: 1 parsing failure.
row # A tibble: 1 x 5 col     row col   expected   actual    file         expected   <int> <chr> <chr>      <chr>     <chr>        actual 1     5 NA    73 columns 9 columns literal data file # A tibble: 1 x 5

Error in filter_impl(.data, quo) : 
  Evaluation error: object 'citation_screening_status' not found.
In addition: Warning messages:
1: In if (grepl("\n", x)) { :
  the condition has length > 1 and only the first element will be used
2: In if (grepl("\n", path)) return(path) :
  the condition has length > 1 and only the first element will be used
3: In if (grepl("\n", file)) { :
  the condition has length > 1 and only the first element will be used
4: Missing column names filled in: 'X73' [73] 
5: In if (grepl("\n", file)) { :
  the condition has length > 1 and only the first element will be used
6: In if (grepl("\n", file)) { :
  the condition has length > 1 and only the first element will be used
7: In rbind(names(probs), probs_f) :
  number of columns of result is not a multiple of vector length (arg 2)

files.zip

brunj7 commented 6 years ago

Please test if 75ba485 solved this problem.

brunj7 commented 6 years ago

Closing this issus as it is solved, but weill create one to revert the function to an object instead of a filename