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ScienceParkStudyGroup / rna-seq-lesson

A Carpentries-style lesson on RNA-Sequencing
https://scienceparkstudygroup.github.io/rna-seq-lesson/
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Searching for regulatory elements #6

Open mgalland opened 4 years ago

mgalland commented 4 years ago

From a list of differential genes.

6.1 Extracting the coordinates of genes

Using biomartr

6.2 Adding or substracting X nts

For instance, 5000 nts If gene is on DNA strand + then substract 5000 nts
If gene is on DNA strand - then add 5000 nts

Promoter retrieval using GenomicRanges MEME for motif...