Indicate positions of single-base changes in graphics.

[jonathancrabtree]

Make colored vertical lines to indicate where the single base changes are.

[jonathancrabtree]

This will apply, at least initially, only to L1s and Alus, for which we have the CALU/LINEU output that describes where the single-base changes are.

[jonathancrabtree]

Current (1.2.0) version:

[jonathancrabtree]

Deletions shown and substitutions color-coded by target base (A=blue, C=red, G=green, T=yellow):

[jonathancrabtree]

An MEI where CALU calls deletions but the original S-W alignment finds matches:

[jonathancrabtree]

With integrated color key: