Add `complete_cases` argument

ScottClaessens / coevolve

coevolve R package for Bayesian dynamic coevolutionary models using Stan

GNU General Public License v2.0

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Closed ScottClaessens closed 1 week ago

ScottClaessens commented 1 week ago

This new argument changes how missing data is handled in the model:

If complete_cases = FALSE (default), all missing values are imputed in the model, even when there is no observed data at all for a given taxon. This could be useful for getting posterior predictions for taxa without data. It's also cleaner to explain to users.
If complete_cases = TRUE, we use listwise deletion for cases with any missing data.

ScottClaessens commented 1 week ago

@ErikRingen just pushed a commit fixing the failing tests - feel free to look over this PR when you get a sec!