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SegataLab / hclust2

Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication.
MIT License
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hclust2 reported the matplotlib warning #8

Open StickHu opened 1 year ago

StickHu commented 1 year ago

Hello,when I was using the hclust2 to draw, there is a problem occurred. Can you please help me solve it ?Here is the warning.

/data/workdir/huwa/software/miniconda3/envs/mpa/bin/hclust2.py:588: MatplotlibDeprecationWarning: You are modifying the state of a globally registered colormap. This has been deprecated since 3.3 and in 3.6, you will not be able to modify a registered colormap in-place. To remove this warning, you can make a copy of the colormap first. cmap = mpl.cm.get_cmap("bbcry").copy() cm.set_under( bottom_col ) /data/workdir/huwa/software/miniconda3/envs/mpa/bin/hclust2.py:594: MatplotlibDeprecationWarning: You are modifying the state of a globally registered colormap. This has been deprecated since 3.3 and in 3.6, you will not be able to modify a registered colormap in-place. To remove this warning, you can make a copy of the colormap first. cmap = mpl.cm.get_cmap("bbcry").copy() cm.set_over( top_col ) Traceback (most recent call last): File "/data/workdir/huwa/software/miniconda3/envs/mpa/bin/hclust2.py", line 825, in hclust2_main() File "/data/workdir/huwa/software/miniconda3/envs/mpa/bin/hclust2.py", line 822, in hclust2_main hm.draw() File "/data/workdir/huwa/software/miniconda3/envs/mpa/bin/hclust2.py", line 684, in draw norm = norm_f( vmin=minv if minv > 0.0 else None, vmax=maxv) File "/data/workdir/huwa/software/miniconda3/envs/mpa/lib/python3.7/site-packages/matplotlib/_api/deprecation.py", line 459, in wrapper return func(*args, *kwargs) File "/data/workdir/huwa/software/miniconda3/envs/mpa/lib/python3.7/site-packages/matplotlib/init.py", line 1414, in inner return func(ax, map(sanitize_sequence, args), **kwargs) File "/data/workdir/huwa/software/miniconda3/envs/mpa/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 5492, in imshow im._scale_norm(norm, vmin, vmax) File "/data/workdir/huwa/software/miniconda3/envs/mpa/lib/python3.7/site-packages/matplotlib/cm.py", line 381, in _scale_norm "Passing parameters norm and vmin/vmax simultaneously is " ValueError: Passing parameters norm and vmin/vmax simultaneously is not supported. Please pass vmin/vmax directly to the norm when creating it.