can get the virome db: - Githubissues

SegataLab / viromeqc

ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes

MIT License

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can get the virome db: #10

Closed allen-zhan340 closed 1 month ago

allen-zhan340 commented 8 months ago

i failed to retrieve DB form the zenodo or dropbox !

can you give me another way to solve this problem?

thanks a lot!

azufre451 commented 8 months ago

Hi allen-zhan340,

Can you access the Zenodo folder here: https://zenodo.org/record/4020594#.X1jxgGMzZDM ? If you can download the three .zip files, you can then decompress them in the <viromeQC_folder>/index/ and it should be equivalent to downloading.

If you cannot access Zenodo from your network, I can place a copy of the database somewhere for you (let me know your preferred file-sharing provider!)

allen-zhan340 commented 8 months ago

cool!!! I can download the three *.zip file from Zenodo.
it's really nice of you!