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SegataLab / viromeqc

ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
MIT License
18 stars 1 forks source link

Database download fails #12

Closed Yasas1994 closed 2 months ago

Yasas1994 commented 2 months ago

Thanks for developing viromeqc!

I'm not able to download the database.

upon execution of viromeQC.py --install a .zip file is downloaded. However, the program crashes as it attempts to decompress the .zip file. I'm guessing the link to the database has expired or migrated elsewhere? can you please assist :)

azufre451 commented 2 months ago

Hi @Yasas1994, thank you for spotting this!

It seems the dropbox link to the DB is not responding, so the download fails. Can you try the alternative Zenodo url? Use:

viromeQC.py --install --zenodo

Be sure to remove the existing downloaded .zip files from the viromeqc folder before running the install (the db should be in <viromeqc_folder>/index/)

Let me know if this fixes the issue!

Yasas1994 commented 2 months ago

@azufre451 Thanks for the swift reply! Yes, It works now :)