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SeisSol / PUMGen

Mesh generation for SeisSol
BSD 3-Clause "New" or "Revised" License
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compiling pumgen with spack on Ubuntu 22.04.2 LTS #65

Closed Jing-Lee-tj closed 12 months ago

Jing-Lee-tj commented 12 months ago

I tried compiling PUMGen with spack without simmetrix on Ubuntu 22.04.2 and results in the following error:

 Error: ProcessError: Command exited with status 1:
    '/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.7-3eb3cedth3wunsstvc4dxs25o2r5wqcx/bin/cmake' '-G' 'Unix Makefiles' 
  >> 15    CMake Error at /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.7-3eb3cedth3wunsstvc4dxs25o2r5wqcx/share/cmake-3.27/Modules/FindHDF5.c
           make:571 (get_target_property):
  >> 33    CMake Error at /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.7-3eb3cedth3wunsstvc4dxs25o2r5wqcx/share/cmake-3.27/Modules/FindPackag
           eHandleStandardArgs.cmake:230 (message):
     34      Could NOT find HDF5 (missing: HL) (found version "1.12.2")

which can be reproduced: spack install pumgen ~with_simmetrix by the way, This worked a while ago, but why doesn't it work now.

Thomas-Ulrich commented 12 months ago

spack install pumgen ~with_simmetrix ^hdf5 +hl should fix your problem. It is again related to the default variants which have a very low priority in spack. See https://github.com/spack/spack/issues/41139 @davschneller : can you confirm we really need HL in pumgen? Then I will add it explicitely in the recipe of seissol, seissol-env and pumgen.

Jing-Lee-tj commented 12 months ago

Thanks, that was the problem, and I found that specifying the openmpi version worked as well.