adding T cell epitope analysis form

[SeokJongYu]

create the analysis job of MHC-I binding prediction.

The analysis tools are downloaded from IEDB site

[SeokJongYu]

Data model for epitope prediction

For MHC I analysis, I need to create a data model for job submission. This data model stores the options for analysis and connects to the job controller for creation only, without modification.

Analysis forms for T Cell epitope

• MHC-I

Field	Datatype
input data	FASTA
Prediction Method	List (prediction methods)
Species	List (Human, rat, mouse, ...)
Alleles	List (alleles)
Output Sort	List (Percentile rank, position in seq.)
Output Format	List (Text, XML)

• MHC-II

Field	Datatype
input data	FASTA
Prediction Method	List (prediction methods)
Species/Locus	List (Human, rat, mouse, ...)
Alleles	List (alleles)
Output Sort	List (Percentile rank, position in seq.)
Output Format	List (Text, XML)

• Class I Immunogenicity

Field	Datatype
input data	FASTA
positions to mask	List (Default, custom)
Custom option	List (alleles)

Analysis forms for B Cell epitope

• Antibody Epitope Prediction

Filed	Datatype
input data	SWISS-Prot ID
input data2	Sequence
Prediction Method	List (Bepipred Linear epitope,...)

• DiscoTope: Structure-based Antibody Prediction

Field	Datatype
Step1	PDB ID
Step2	Chain ID
Version	List

• ElliPro: Antibody Epitope Prediction

Field	Datatype
seq	PDB ID
min score	List (0.5, 0.6, ...)
max distance	List (4,5,6,7,8)

[SeokJongYu]

I should separate this task into the 3 sub-task.

1. modeling of the analysis object and defining the result object
2. modeling a polymorphic architecture for each analysis tool
3. creating the analysis form