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Septima / malstroem

Tools for screening of bluespots and water flow between bluespots. Fork of original SDFE repository
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Issue installing malstroem #33

Closed SIGGRUV closed 5 months ago

SIGGRUV commented 2 years ago

I have previously used the Septima fork of malstroem but need to install it on another computer. I am unable to install it and am uncertain what is happening. This is the text produced in the anaconda prompt:

(malstroem) C:\Users\J>pip install https://github.com/Septima/malstroem/archive/master.zip#[speedups] Collecting https://github.com/Septima/malstroem/archive/master.zip#[speedups] Using cached https://github.com/Septima/malstroem/archive/master.zip Preparing metadata (setup.py) ... done Requirement already satisfied: numpy in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from malstroem==1.0.0) (1.21.6) Requirement already satisfied: click in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from malstroem==1.0.0) (8.1.3) Requirement already satisfied: gdal in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from malstroem==1.0.0) (3.5.2) Requirement already satisfied: future in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from malstroem==1.0.0) (0.18.2) Requirement already satisfied: scipy in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from malstroem==1.0.0) (1.7.3) Requirement already satisfied: click-log==0.1.8 in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from malstroem==1.0.0) (0.1.8) Requirement already satisfied: colorama in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from click->malstroem==1.0.0) (0.4.6) Requirement already satisfied: importlib-metadata in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from click->malstroem==1.0.0) (5.0.0) Requirement already satisfied: zipp>=0.5 in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from importlib-metadata->click->malstroem==1.0.0) (3.10.0) Requirement already satisfied: typing-extensions>=3.6.4 in c:\users\j\anaconda3\envs\malstroem\lib\site-packages (from importlib-metadata->click->malstroem==1.0.0) (4.4.0) Building wheels for collected packages: malstroem Building wheel for malstroem (setup.py) ... error error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [96 lines of output] C:\Users\J\anaconda3\envs\malstroem\lib\site-packages\setuptools\dist.py:774: UserWarning: Usage of dash-separated 'dry-run' will not be supported in future versions. Please use the underscore name 'dry_run' instead % (opt, underscore_opt) running bdist_wheel running build running build_py creating build creating build\lib.win-amd64-cpython-37 creating build\lib.win-amd64-cpython-37\malstroem copying malstroem\approx.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\bluespots.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\dem.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\hyps.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\io.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\network.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\rain.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\streams.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\vector.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem__init.py -> build\lib.win-amd64-cpython-37\malstroem creating build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\dtypes.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\fill.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\flow.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\label.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\net.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms_raster_utils.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms__init__.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms creating build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\bluespot.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\cli.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\complete.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\dem.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\finalstate.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\hyps.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\initvolume.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\stream.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts_utils.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\init.py -> build\lib.win-amd64-cpython-37\malstroem\scripts creating build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups copying malstroem\algorithms\speedups\init__.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups running egg_info creating malstroem.egg-info writing malstroem.egg-info\PKG-INFO writing dependency_links to malstroem.egg-info\dependency_links.txt writing entry points to malstroem.egg-info\entry_points.txt writing requirements to malstroem.egg-info\requires.txt writing top-level names to malstroem.egg-info\top_level.txt writing manifest file 'malstroem.egg-info\SOURCES.txt' reading manifest file 'malstroem.egg-info\SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' adding license file 'LICENSE' writing manifest file 'malstroem.egg-info\SOURCES.txt' C:\Users\J\anaconda3\envs\malstroem\lib\site-packages\setuptools\command\build_py.py:202: SetuptoolsDeprecationWarning: Installing 'malstroem.algorithms.speedups' as data is deprecated, please list it in packages. !!

      ############################
      # Package would be ignored #
      ############################
      Python recognizes 'malstroem.algorithms.speedups' as an importable package,
      but it is not listed in the `packages` configuration of setuptools.

      'malstroem.algorithms.speedups' has been automatically added to the distribution only
      because it may contain data files, but this behavior is likely to change
      in future versions of setuptools (and therefore is considered deprecated).

      Please make sure that 'malstroem.algorithms.speedups' is included as a package by using
      the `packages` configuration field or the proper discovery methods
      (for example by using `find_namespace_packages(...)`/`find_namespace:`
      instead of `find_packages(...)`/`find:`).

      You can read more about "package discovery" and "data files" on setuptools
      documentation page.

  !!

    check.warn(importable)
  copying malstroem\algorithms\speedups\_fill.c -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_flow.c -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_label.c -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_definitions.pxd -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_fill.pyx -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_flow.pyx -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_label.pyx -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  running build_ext
  building 'malstroem.algorithms.speedups._fill' extension
  creating build\temp.win-amd64-cpython-37
  creating build\temp.win-amd64-cpython-37\Release
  creating build\temp.win-amd64-cpython-37\Release\malstroem
  creating build\temp.win-amd64-cpython-37\Release\malstroem\algorithms
  creating build\temp.win-amd64-cpython-37\Release\malstroem\algorithms\speedups
  "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Tools\MSVC\14.34.31933\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -IC:\Users\J\anaconda3\envs\malstroem\lib\site-packages\numpy\core\include -IC:\Users\J\anaconda3\envs\malstroem\include -IC:\Users\J\anaconda3\envs\malstroem\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Tools\MSVC\14.34.31933\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\VS\include" /Tcmalstroem/algorithms/speedups/_fill.c /Fobuild\temp.win-amd64-cpython-37\Release\malstroem/algorithms/speedups/_fill.obj
  _fill.c
  C:\Users\J\anaconda3\envs\malstroem\include\pyconfig.h(59): fatal error C1083: Cannot open include file: 'io.h': No such file or directory
  error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2022\\BuildTools\\VC\\Tools\\MSVC\\14.34.31933\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for malstroem Running setup.py clean for malstroem Failed to build malstroem Installing collected packages: malstroem Running setup.py install for malstroem ... error error: subprocess-exited-with-error

× Running setup.py install for malstroem did not run successfully. │ exit code: 1 ╰─> [96 lines of output] C:\Users\J\anaconda3\envs\malstroem\lib\site-packages\setuptools\dist.py:774: UserWarning: Usage of dash-separated 'dry-run' will not be supported in future versions. Please use the underscore name 'dry_run' instead % (opt, underscore_opt) running install C:\Users\J\anaconda3\envs\malstroem\lib\site-packages\setuptools\command\install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. setuptools.SetuptoolsDeprecationWarning, running build running build_py creating build creating build\lib.win-amd64-cpython-37 creating build\lib.win-amd64-cpython-37\malstroem copying malstroem\approx.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\bluespots.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\dem.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\hyps.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\io.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\network.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\rain.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\streams.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem\vector.py -> build\lib.win-amd64-cpython-37\malstroem copying malstroem__init.py -> build\lib.win-amd64-cpython-37\malstroem creating build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\dtypes.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\fill.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\flow.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\label.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms\net.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms_raster_utils.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms copying malstroem\algorithms__init__.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms creating build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\bluespot.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\cli.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\complete.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\dem.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\finalstate.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\hyps.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\initvolume.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\stream.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts_utils.py -> build\lib.win-amd64-cpython-37\malstroem\scripts copying malstroem\scripts\init.py -> build\lib.win-amd64-cpython-37\malstroem\scripts creating build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups copying malstroem\algorithms\speedups\init__.py -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups running egg_info writing malstroem.egg-info\PKG-INFO writing dependency_links to malstroem.egg-info\dependency_links.txt writing entry points to malstroem.egg-info\entry_points.txt writing requirements to malstroem.egg-info\requires.txt writing top-level names to malstroem.egg-info\top_level.txt reading manifest file 'malstroem.egg-info\SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' adding license file 'LICENSE' writing manifest file 'malstroem.egg-info\SOURCES.txt' C:\Users\J\anaconda3\envs\malstroem\lib\site-packages\setuptools\command\build_py.py:202: SetuptoolsDeprecationWarning: Installing 'malstroem.algorithms.speedups' as data is deprecated, please list it in packages. !!

      ############################
      # Package would be ignored #
      ############################
      Python recognizes 'malstroem.algorithms.speedups' as an importable package,
      but it is not listed in the `packages` configuration of setuptools.

      'malstroem.algorithms.speedups' has been automatically added to the distribution only
      because it may contain data files, but this behavior is likely to change
      in future versions of setuptools (and therefore is considered deprecated).

      Please make sure that 'malstroem.algorithms.speedups' is included as a package by using
      the `packages` configuration field or the proper discovery methods
      (for example by using `find_namespace_packages(...)`/`find_namespace:`
      instead of `find_packages(...)`/`find:`).

      You can read more about "package discovery" and "data files" on setuptools
      documentation page.

  !!

    check.warn(importable)
  copying malstroem\algorithms\speedups\_fill.c -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_flow.c -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_label.c -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_definitions.pxd -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_fill.pyx -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_flow.pyx -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  copying malstroem\algorithms\speedups\_label.pyx -> build\lib.win-amd64-cpython-37\malstroem\algorithms\speedups
  running build_ext
  building 'malstroem.algorithms.speedups._fill' extension
  creating build\temp.win-amd64-cpython-37
  creating build\temp.win-amd64-cpython-37\Release
  creating build\temp.win-amd64-cpython-37\Release\malstroem
  creating build\temp.win-amd64-cpython-37\Release\malstroem\algorithms
  creating build\temp.win-amd64-cpython-37\Release\malstroem\algorithms\speedups
  "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Tools\MSVC\14.34.31933\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -IC:\Users\J\anaconda3\envs\malstroem\lib\site-packages\numpy\core\include -IC:\Users\J\anaconda3\envs\malstroem\include -IC:\Users\J\anaconda3\envs\malstroem\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Tools\MSVC\14.34.31933\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\VS\include" /Tcmalstroem/algorithms/speedups/_fill.c /Fobuild\temp.win-amd64-cpython-37\Release\malstroem/algorithms/speedups/_fill.obj
  _fill.c
  C:\Users\J\anaconda3\envs\malstroem\include\pyconfig.h(59): fatal error C1083: Cannot open include file: 'io.h': No such file or directory
  error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2022\\BuildTools\\VC\\Tools\\MSVC\\14.34.31933\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: legacy-install-failure

× Encountered error while trying to install package. ╰─> malstroem

note: This is an issue with the package mentioned above, not pip. hint: See above for output from the failure.

(malstroem) C:\Users\J>

jiaqingxiao commented 1 year ago

me too

AsgerPetersen commented 1 year ago

I am sorry. I would love to dive into this, but for the time being I do not have the ressources necessary.

AsgerPetersen commented 5 months ago

It turns out that this error is thrown when you try building without having "Windows SDK for Desktop C++" installed. This SO thread https://stackoverflow.com/questions/40018405/cannot-open-include-file-io-h-no-such-file-or-directory explains it.