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Shamir-Lab / 4CAC

MIT License
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How to interpret output file from classify_xgb.py #3

Closed sbennett-cyber closed 4 months ago

sbennett-cyber commented 1 year ago

Very exciting pipeline!

I would like to use the first step, classify_xgb.py, to identify if a contig comes from a eukaryote. Where can I find a description of how to interpret the results from this script? I know the first column is contig ID, but I am unclear about the other columns. Thanks!

SDquest commented 4 months ago

Thanks for your interesting. The other columns represent the confident of XGBoost model to classify one contig into virus, plasmid, prokaryote, or eukaryote. We have now added the header in the output file. Please use the new classify_xgb.py file