Shamir-Lab PlasClass issues

Shamir-Lab / PlasClass

A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781

MIT License

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issues

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Bump scikit-learn from 0.21.3 to 1.5.0

#22 dependabot[bot] opened 3 months ago
0
Hello, may I ask if you can provide a chromosome dataset for training purposes

#21 a-piece-of-teemo opened 10 months ago
4
Bump scipy from 1.3.2 to 1.10.0

#20 dependabot[bot] closed 1 year ago
0
How to determine whether it is plasmid according to destination file

#19 XXanna closed 1 year ago
2
Does PlasClass currently support training new models?

#18 a-piece-of-teemo closed 1 year ago
1
Problems installing PlasClass

#17 alanxelena opened 1 year ago
3
Bump joblib from 0.14 to 1.2.0

#16 dependabot[bot] closed 2 years ago
0
Bump numpy from 1.17.4 to 1.22.0

#15 dependabot[bot] closed 2 years ago
0
Highly scoring plasmid in an organism where No plasmid is reported in Literature

#14 Rohit-Satyam closed 2 years ago
1
Fixes issue #12

#13 cerebis closed 2 years ago
0
Mixed case sequences cause PlasClass to run indefinitely.

#12 cerebis closed 2 years ago
3
How long does the training module take to finish one job

#11 ysawires12345678 closed 3 years ago
9
-bash: syntax error near unexpected token `newline', error when attempt to run PlasClass

#10 ysawires12345678 closed 3 years ago
7
Issues with scikit and numpy versions?

#9 suskraem closed 3 years ago
21
Error? when running train.py

#8 deropi closed 3 years ago
6
Error running test.py

#7 rpalcab closed 3 years ago
5
Shotgun metagenomes

#6 ntromas closed 3 years ago
1
scikit-learn version

#5 emdyess closed 4 years ago
1
Requesting help with model training

#4 anuradhawick closed 4 years ago
1
Score?

#3 sjaenick closed 4 years ago
4
Downloading required data

#2 anuradhawick closed 4 years ago
2
Training locally?

#1 orctyr closed 4 years ago
1