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Shamir-Lab / Recycler

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
BSD 3-Clause "New" or "Revised" License
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make_fasta_from_fastg.py: error: argument -b/--bam is required #18

Closed thanhleviet closed 6 years ago

thanhleviet commented 6 years ago

In the section Preparing the BAM input , I'm confused when following the instruction, if I use make_fasta_from_fastg.py for preparing a bam file, why do I need a bam file as an input? Please clarify this step. Thanks

thanhleviet commented 6 years ago

I figured out what issue was. I installed recycler via conda so mine is old version 0.6. The instruction is for the latest version I guess.