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Shamir-Lab / Recycler

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
BSD 3-Clause "New" or "Revised" License
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ImportError: No module named recyclelib.utils #27

Open gamer3051 opened 6 years ago

gamer3051 commented 6 years ago

I recently had to reinstall pysam (using conda) and now Recycler is not working for some reason... Here is what I am trying to run in the terminal: Recycler/bin/recycle.py -g Downloads/SPAdes/ThesisRecycler/assembly_graph.fastg -k 77 -b Downloads/SPAdes/ThesisRecycler/reads_pe_primary.sort.bam

This is the error I am getting: Traceback (most recent call last): File "Recycler/bin/recycle.py", line 4, in from recyclelib.utils import * ImportError: No module named recyclelib.utils

I am running MacOSX. I am very new to Python/programming, any help would be appreciated.

dpellow commented 6 years ago

Hi @gamer3051 - what version of Recycler are you using? Can you try to reinstall the module?