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Shamir-Lab / Recycler

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
BSD 3-Clause "New" or "Revised" License
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Fastg file #3

Closed fabianomenegidio closed 7 years ago

fabianomenegidio commented 7 years ago

Congratulations for the script.

I used it to predict plasmids in a new assembly with SPAdes and PlasmidSPAdes and had no problems.

I wonder if I can make the same prediction, for example, with an output of CISA with different assemblies.

rozovr commented 7 years ago

Hi @menegidio , Thanks for the kind words! I am not familiar with CISA. What kind of outputs does it produce?