Cleanup and report fixes for new configuration system

ShawHahnLab / chiimp

Computational, High-throughput Individual Identification through Microsatellite Profiling

GNU Affero General Public License v3.0

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Cleanup and report fixes for new configuration system #99

Closed ressy closed 1 year ago

ressy commented 1 year ago

The configuration changes in #98 left some usage out of date in the report rendering, and revealed a problem with relative paths and rmarkdown's render function. This should get the report rendering correctly again.