sample paths properties should exclude quote characters

ShawHahnLab / umbra

Python package and executable for Linux for managing Illumina sequencing runs

GNU Affero General Public License v3.0

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sample paths properties should exclude quote characters #62

Closed ressy closed 5 years ago

ressy commented 5 years ago

GenerateFASTQ's output on disk does not include ' (and probably ") when those appear in the sample sheet. These should be excluded in illumina.alignment.sample_files_for_num.