ShawHahnLab / umbra

Python package and executable for Linux for managing Illumina sequencing runs
GNU Affero General Public License v3.0
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Remove quote characters when matching sample names to file names #64

Closed ressy closed 5 years ago

ressy commented 5 years ago

Our list of special characters was missing single and double quotes, and from experience single quotes and presumably double quotes are included in the substitution for sample file names. In the long run it would probably be safer to use a list of allowed instead of disallowed characters, and maybe safer yet to use sample numbers instead of names and match the suffix of the paths. But this fixes #62 at least.