ShawHahnLab / umbra

Python package and executable for Linux for managing Illumina sequencing runs
GNU Affero General Public License v3.0
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Run failure should be available via Run class and the report #82

Open ressy opened 4 years ago

ressy commented 4 years ago

If a run fails it never shows up as completed in IlluminaProcessor or the report or anywhere. This information should be available through a simple property of the Run class, and reflected in a clear way in the reporting.

Illumina doesn't summarize this status clearly anywhere in the run directory as far as I can tell, though. The best we may be able to do is parse the error status out of the files in the Logs directory.