This switches from trying to predict fastq.gz filenames from sample names in illumina.alignment. sample_files_for_num to instead loading and parsing the filenames and matching via sample number. This should be more reliable for a variety of situations, e.g., fastq.gz files output from bcl2fastq versus created directly on the sequencer. Fixes #93.
This switches from trying to predict fastq.gz filenames from sample names in
illumina.alignment. sample_files_for_numto instead loading and parsing the filenames and matching via sample number. This should be more reliable for a variety of situations, e.g., fastq.gz files output from bcl2fastq versus created directly on the sequencer. Fixes #93.