ShawHahnLab / umbra

Python package and executable for Linux for managing Illumina sequencing runs
GNU Affero General Public License v3.0
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Checkpoint.txt file in Alignment directories is not parsed correctly #96

Closed ressy closed 4 years ago

ressy commented 4 years ago

Related to #91, illumina.util.load_checkpoint only works as expected with the most common case, for a completed FASTQGeneration. Looking at Checkpoint.txt for interrupted/failed cases I see that in general there's both an integer and a keyword (which just happens to be an empty string in the common case). load_checkpoint should be updated to parse out both an integer and a keyword in all cases.