ShawHahnLab / umbra

Python package and executable for Linux for managing Illumina sequencing runs
GNU Affero General Public License v3.0
3 stars 0 forks source link

Parse checkpoint.txt files correctly #97

Closed ressy closed 4 years ago

ressy commented 4 years ago

Updates illumina.util.load_checkpoint to parse the Checkpoint.txt files for alignments that haven't completed. Previously only one case was parsed correctly, and others would lead to a ValueError. With this change incomplete (e.g. failed) alignments will be loaded but the complete property will evaluate to False. Fixes #96.