What should this tool do?
Same functionality as .count_elements() but returning percentages and capable of filtering by alphabet
Is there an existing reference implementation?
A bit like the DNA Stats tool when only looking at single bases.
What are the tool's inputs?
Any sequence
What is the tool's output?
A HashMap<char, f64> with each char being paired to its percentage of the input sequence. The HashMap should only contain chars legal in the alphabet defined by SeqKind – including all legal chars with a 0% prevalence!
Other Implementation Details
Percents can be calculated using count_elements() and len(). Filtering to a map with all and only the correct chars for a given alphabet can be done by checking self.kind and calling ByteMap::to_hashmap() with .contains(). This is blocked on #20 for now!
What should this tool do? Same functionality as
.count_elements()but returning percentages and capable of filtering by alphabetIs there an existing reference implementation? A bit like the DNA Stats tool when only looking at single bases.
What are the tool's inputs? Any sequence
What is the tool's output? A
HashMap<char, f64>with each char being paired to its percentage of the input sequence. TheHashMapshould only containchars legal in the alphabet defined bySeqKind– including all legal chars with a 0% prevalence!Other Implementation Details Percents can be calculated using
count_elements()andlen(). Filtering to a map with all and only the correct chars for a given alphabet can be done by checkingself.kindand callingByteMap::to_hashmap()with.contains(). This is blocked on #20 for now!