Open PerrineLacour opened 2 years ago
I tried overwriting the counts2normalized_smartse2 function and replacing the "cellwave" with "cellcall" in
f.tmp <- system.file("extdata", "homo/transcriptmaxLength.Rdata", package="cellwave")
and it works now.
Would it be possible to correct this problem?
Best,
Acctually your point is right, and i have revise this bug.
Thanks for your contributions !!
Your ability to catch code is admirable. Thank you again sincerely. Modification had be conducted.
Hi,
I tried to create an object using this command
CreateNichConObject(data = reads_df, min.feature = 500, source = "fullLength", Org = "Mus musculus", names.delim = "M", names.field = 1)
as shown in the tutorial.I get this error message
Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection In addition: Warning message: In readChar(con, 5L, useBytes = TRUE) : cannot open compressed file '', probable reason 'No such file or directory'
From what I could see, I think it comes from the counts2normalized_smartseq2 function when it tries to find the reference file for transcript length.
Do you know how I can fix that problem?
Best,