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ShellyCoder / cellcall

inferring cell-cell communication from scRNA-seq of ligand-receptor
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Can you use CellCall with mouse datasets? #18

Open rachel662 opened 2 years ago

rachel662 commented 2 years ago

Hi there, can you use cellcall with mouse datasets at all?

cheers Rachel

ShellyCoder commented 2 years ago

I hope this would not be late for this reply.

With the parameter Org to switch from human to mouse when you set Org = "Homo sapiens" or Org = "Mus musculus".

Furthermore, we set Org = "Homo sapiens" as default in following function: CreateNichConObject(), TransCommuProfile(), getHyperPathway(), LR2TF(), CreateObject_fromSeurat()

So manual set the parameter Org = "Mus musculus", we will reduce such duplicate settings in future versions and replace them with a global setting.

Sorry for this inconvience.

Thanks !