ShellyCoder / cellcall

inferring cell-cell communication from scRNA-seq of ligand-receptor
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function error: ViewInterCircos #39

Closed hhx465453939 closed 1 year ago

hhx465453939 commented 1 year ago

your package is pretty good and I like to use, while I seemed facing some problem these days, here is the record: `> pdf(file="全细胞互作circle.pdf",width=20,height=20)

ViewInterCircos(object = mt, font = 2, cellColor = cell_color,

  • lrColor = c("#FF34B3","#BC8F8F","#20B2AA","#00F5FF","#FFA500",'#FFFF00','#F0FFFF'),
  • arr.type = "big.arrow",arr.length = 0.04,
  • trackhight1 = 0.05, slot="expr_l_r_log2_scale",
  • linkcolor.from.sender = TRUE,
  • linkcolor = NULL, gap.degree = 0.1, #细胞类型多的话设置小点,不然图太大画不出来
  • trackhight2 = 0.032, track.margin2 = c(0.01,0.12), DIY = FALSE) [1] 0 Error in color.function[test[i, "cell_from"]] : attempt to apply non-function`