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ShellyCoder / cellcall

inferring cell-cell communication from scRNA-seq of ligand-receptor
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Issues running TransCommuProfile #40

Open elisulvaran opened 1 year ago

elisulvaran commented 1 year ago

Hello! I have been trying to use your tool, but when I run the TransCommuProfile function, it runs for a while, and then R freezes and I have to restart it. Do you have any ideas of why this might be happening? Help would be highly appreciated! Thanks

ShellyCoder commented 1 year ago

Sorry for use the format of dataframe in current version, not dgMatrix. Since the scRNAseq is a sparse matrix, memory cost much. Our team is focusing to update a new version for user.

Byronxy commented 1 year ago

I have the same issue. Thanks for update