ShellyCoder / cellcall

inferring cell-cell communication from scRNA-seq of ligand-receptor
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Where to find the table with complete ligand-receptor-TF-pathway data #44

Open gynecolojiji opened 1 year ago

gynecolojiji commented 1 year ago

Thanks for inventing the tools for us to use!

I am wondering where I can find the complete list of the table including all ligand-receptor-TF-pathway data. I found one table in the /cellcall/inst/extdata but it is not complete for some pathways are not included.

Appreciate it if you can give me the table.

ShellyCoder commented 1 year ago

I apologize for any confusion caused. The dataset link for ligand-receptor-transcription factor used in our project is as follows. Regarding some pathways not being included, if it's convenient for you, could you please provide us with a few examples for us to review? Your contribution is greatly appreciated.

https://github.com/ShellyCoder/cellcall/blob/master/inst/extdata/new_ligand_receptor_TFs_extended.txt