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ShellyCoder / cellcall

inferring cell-cell communication from scRNA-seq of ligand-receptor
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Questions about LR2TF function #8

Open anchormok opened 2 years ago

anchormok commented 2 years ago

Hi, Shelly, thanks for your excellent package. Recently, when I performed the "LR2TF" function between some sender cells and receiver cells, an error occurred "Error in my_ligand_receptor_df[n, 1] : Subscript out of bounds". How can I solve this error?

Looking forward to your response.

ShellyCoder commented 2 years ago

Hi anchormok,

Have you checked the score of all ligand-receptor between some sender cells and receiver cells? If all scores are equal to zero, the error may happen.

Best Appreiations Shelly.