Open youwh1996 opened 2 years ago
Could you show your code? I can run in more than 20000 cells.
Could you show your code? I can run in more than 20000 cells.
I used the CreateObject_fromSeurat function to run my data. However, This step failed because the dgmatrix was too large to convert to expression dataframe.
I also meet the same problem! 100000 cells test <-CreateObject_fromSeurat(Seurat.object=data,slot="counts",cell_type="immune_annotation",data_source="UMI",scale.factor = 10^6,Org = "Homo sapiens") Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102
@millersan @youwh1996 @ShellyCoder
I can run in 78000 cells.
I can run in 78000 cells.
I still can't run in 100k Cells @ShellyCoder @
I have about 140K cells and also has been stuck at TransCommuProfile
Dear When I use this package to analyze the scRNA data with over 20000 cells, the package cannot run because of the dataframe expression was too large? Could you please address this bug?