Open c747903646 opened 2 years ago
yyou1996
commented
2 years ago Hi @c747903646,
We didn't conduct unsupervised_TU on GITHUB dataset (but do in semisupervised_TU). It looks like the edge index get mismatches when x = F.relu(self.convs[i](x, edge_index)) is executed. Would you confirm that via (i) trying other datasets e.g. NCI1 with the same script, and (ii) running on GITHUB dataset semisupervised setting?
c747903646
commented
2 years ago Hi @c747903646,
We didn't conduct unsupervised_TU on GITHUB dataset (but do in semisupervised_TU). It looks like the edge index get mismatches when
x = F.relu(self.convs[i](x, edge_index))is executed. Would you confirm that via (i) trying other datasets e.g. NCI1 with the same script, and (ii) running on GITHUB dataset semisupervised setting?
Yes, I have run the same script on other TU datasets, such as COLLAB, DD, NCI1, RDT-5K and RDT-B, and all work except run on GITHUB. Meanwhile, semisupervised codes work all TU datasets, including GITHUB.
In debugging, I found that before x = F.relu(self.convs[i](x, edge_index)) is excuted, the dimension of x is matched with self.convs[i]. So I could not understand the error info, srcIndex < srcSelectDimSize.
yyou1996
commented
2 years ago Mismatch could happen if edge_index.max()+1 > x.shape[0], which is my suspect.
I have run the command
python gsimclr.py --DS github_stargazers --lr 0.01 --local --num-gc-layers 3 --aug dnodes --seed 0but got an error. The detailed report are listed as follows.
================ lr: 0.01 num_features: 1 hidden_dim: 32 num_gc_layers: 3
C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [272,0,0], thread: [96,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [272,0,0], thread: [97,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [272,0,0], thread: [98,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [272,0,0], thread: [99,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [272,0,0], thread: [100,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [96,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [97,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [98,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [99,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [100,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [101,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [102,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [103,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [104,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [105,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [106,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [107,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [108,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [109,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [110,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [111,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [112,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [113,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [114,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [115,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [116,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [117,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [118,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [119,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [120,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [121,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [122,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [123,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [124,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [125,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [126,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [307,0,0], thread: [127,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [96,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [97,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [98,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [99,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [100,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [101,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [102,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [103,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [104,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [105,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [106,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [107,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [108,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [109,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [110,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [111,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [112,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [113,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [114,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [115,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [116,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [117,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [118,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [119,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [120,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [121,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [122,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [123,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [124,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [125,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [126,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [127,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [0,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [1,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [2,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [3,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [4,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [5,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [6,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [7,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [8,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [9,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [10,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [11,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [12,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [13,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [14,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [15,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [16,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [17,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [18,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [19,0,0] AssertionsrcIndex < srcSelectDimSizefailed. C:/w/b/windows/pytorch/aten/src/ATen/native/cuda/Indexing.cu:662: block: [311,0,0], thread: [20,0,0] AssertionsrcIndex < srcSelectDimSizefailed. 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emb, y = model.encoder.get_embeddings(dataloader_eval)
File "D:\Document\Works\Codes\Python\GCN-related\GraphCL-master\unsupervised_TU_exhsp\gin.py", line 82, in getembeddings
x, = self.forward(x, edge_index, batch)
File "D:\Document\Works\Codes\Python\GCN-related\GraphCL-master\unsupervised_TU_exhsp\gin.py", line 54, in forward
x = F.relu(self.convs[i](x, edge_index))
File "D:\App\Anaconda3\envs\GraphCL_unsupervised\lib\site-packages\torch\nn\modules\module.py", line 889, in _call_impl
result = self.forward(*input, kwargs)
File "D:\App\Anaconda3\envs\GraphCL_unsupervised\lib\site-packages\torch_geometric\nn\conv\gin_conv.py", line 69, in forward
return self.nn(out)
File "D:\App\Anaconda3\envs\GraphCL_unsupervised\lib\site-packages\torch\nn\modules\module.py", line 889, in _call_impl
result = self.forward(*input, *kwargs)
File "D:\App\Anaconda3\envs\GraphCL_unsupervised\lib\site-packages\torch\nn\modules\container.py", line 119, in forward
input = module(input)
File "D:\App\Anaconda3\envs\GraphCL_unsupervised\lib\site-packages\torch\nn\modules\module.py", line 889, in _call_impl
result = self.forward(input, kwargs)
File "D:\App\Anaconda3\envs\GraphCL_unsupervised\lib\site-packages\torch\nn\modules\linear.py", line 94, in forward
return F.linear(input, self.weight, self.bias)
File "D:\App\Anaconda3\envs\GraphCL_unsupervised\lib\site-packages\torch\nn\functional.py", line 1753, in linear
return torch._C._nn.linear(input, weight, bias)
RuntimeError: CUDA error: CUBLAS_STATUS_NOT_INITIALIZED when calling `cublasCreate(handle)``