How could I get deepgo_tf?

Shen-Lab / TALE

Transformer-based protein function Annotation with joint feature-Label Embedding

https://doi.org/10.1093/bioinformatics/btab198

MIT License

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How could I get deepgo_tf? #1

Closed maovshao closed 3 years ago

maovshao commented 3 years ago

Hey guys, this is a very meaningful work and attracts me a lot. Thanks you for sharing your work!

But I met a problem when I tried to reproduce your work. Which is ----No module named 'deepgo_tf'----

I tried "pip install deepgoplus". It works but cannot solve this problem. Can you tell me how to get "deepgo_tf"? By the way, a more detailed dependence is needed.

Thans a lot again!

Shen-Lab commented 3 years ago

Thank you for the interest and the question! @YueCao2017 Could you please help out? Our model does not rely on DeepGo so it is unclear to me why importing deepgo_tf was necessary, let alone the code is not working https://github.com/Shen-Lab/TALE/blob/master/src/train.py#L19 Meanwhile you commented out Lines 17-18 but you do need HMCNF, which is also baffling. Thanks.

YueCao94 commented 3 years ago

Hi @maovshao ! Thank you for your question! Our codes indeed do not rely on deepgo_tf, which is a mistake in the previous version. I have updated the codes and you can re-download. Thank you again!