allow interactive plots in both RStudio and markdown reports

Shians / Glimma

Glimma R package

GNU Lesser General Public License v3.0

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allow interactive plots in both RStudio and markdown reports #109

Open mritchie opened 7 years ago

mritchie commented 7 years ago

Use shiny/htmlwidgets for RStudio solution? Stuart has a prototype

vd4mmind commented 3 years ago

Hi @Shians is this Feature already available? I know there is a markdown compatible function now for the glMDplot() but I do not see one for the glMDSPlot(). Is there one?

Shians commented 3 years ago

@vd4mmind Glimma has been updated to V2 as of the most recent release, the old functions still work for backwards compatibility but there are new functions with new names. Please check https://github.com/hasaru-k/GlimmaV2 for details. The plots are now glimmaMDS() and glimmaMA() and can be embedded in rmarkdown reports, though I would recommend not putting more than 1 MA plot per report if the data size is large.

vd4mmind commented 3 years ago

@Shians , this is very exciting. Thanks for responding. Will definitely try out the GlimmaV2.