Maybe you can help,
When using glMDPlot based on the DEseq2 data, the right HTML panel (samples groups vs. FPM values) gives values that do not correspond to the selected gene of the MA plot on the left. Importantly, this problems happens only when the 'status' argument is added (the 1,-1,0 values that correspond to the FPM and the DE data, in the same order). Once the status argument is omitted, there are no apparent problems.
Hi Glimma developers,
Maybe you can help, When using glMDPlot based on the DEseq2 data, the right HTML panel (samples groups vs. FPM values) gives values that do not correspond to the selected gene of the MA plot on the left. Importantly, this problems happens only when the 'status' argument is added (the 1,-1,0 values that correspond to the FPM and the DE data, in the same order). Once the status argument is omitted, there are no apparent problems.
would be grateful your help, Assaf