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Shians / NanoMethViz

Apache License 2.0
21 stars 2 forks source link

export_data_to_metylKit #14

Open 0Bernhard opened 2 years ago

0Bernhard commented 2 years ago

Hello

First of all really nice program! I was wondering if there is an easy way to export the data for methylKit? Maybe i missed the option somehow or you would not advise it for some reason. Any advise is appreciated!

Cheers, Berni

Shians commented 2 years ago

There's not currently functionality to do this, and I am not entirely sure it's possible. The main challenge is that methylKit keeps track of C and T numbers at sites, which I do not, so there's no way to restore that information in an export. I've only just looked at the package for the first time so if there's a reduced format that doesn't store that information and still allows the package to be used then I'm happy to into creating an export function for it.

0Bernhard commented 2 years ago

cool i will look into it but thank you for the explaination!