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Shians / NanoMethViz

https://shians.github.io/NanoMethViz/
Apache License 2.0
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Converting TSV for use #4

Open amootta opened 3 years ago

amootta commented 3 years ago

Hi there, Have just recently installed NanoMethViz. I am unsure what format is needed to be loaded for it to work? I have phased TSV files resulting from Nanopolish methylation calls --> Phased by nanomethphase to produce separate haplotype TSV files. I have tried running the convert_methy_format function, but it says that the function doesn't exist in the current installed version that I have?

Would really appreciate your help with this. Have tried to manually bgzip and index (tabix) my files, but nothing seems to be working!

Shians commented 3 years ago

Hi, importing data is generally done using the NanoMethViz::create_tabix_file() function, I'm not entirely sure what NanoMethPhase outputs but if it retains the format of Nanopolish and simply split the files then it should be fine.