In various talks I have demonstrated violin plots using NanoMethViz. To create this required querying the data with query_methy() and then creating a boxplot using ggplot2. This could be wrapped up into a function so that such plots are easier to make.
This function will be similar to plot_agg_regions() but in a more summarised form. Each data point used for the violin plot should be the methylation proportion of an entire feature, rather than individual sites. This trades resolution for less coverage bias over the genes.
In various talks I have demonstrated violin plots using NanoMethViz. To create this required querying the data with
query_methy()and then creating a boxplot using ggplot2. This could be wrapped up into a function so that such plots are easier to make.This function will be similar to
plot_agg_regions()but in a more summarised form. Each data point used for the violin plot should be the methylation proportion of an entire feature, rather than individual sites. This trades resolution for less coverage bias over the genes.