Shicheng-Guo / bsmap

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Error in installing bsmap-1.02 #2

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago
What steps will reproduce the problem?
1. cd bsmap-1.02
2. make
3.

What is the expected output? What do you see instead?
I got similar error as the previous one. Then I downgraded gcc/g++ from 4.4
to 4.2. The error message changed to: 

g++ -DMAXGAP=0 -DMAXHITS=1000 -DTHREAD -O3 -funroll-loops   -DDB_CHR
-DREAD_96 -c main.cpp -o main.a.o
g++ -DMAXGAP=0 -DMAXHITS=1000 -DTHREAD -O3 -funroll-loops   -DDB_CHR
-DREAD_96 -c pairs.cpp -o pairs.a.o
g++ -DMAXGAP=0 -DMAXHITS=1000 -DTHREAD -O3 -funroll-loops   -DDB_CHR
-DREAD_96 -c param.cpp -o param.a.o
g++ -DMAXGAP=0 -DMAXHITS=1000 -DTHREAD -O3 -funroll-loops   -DDB_CHR
-DREAD_96 -c reads.cpp -o reads.a.o
g++ -DMAXGAP=0 -DMAXHITS=1000 -DTHREAD -O3 -funroll-loops   -DDB_CHR
-DREAD_96 -c utilities.cpp -o utilities.a.o
g++ -DMAXGAP=0 -DMAXHITS=1000 -DTHREAD -O3 -funroll-loops   -DDB_CHR
-DREAD_96 align.a.o dbseq.a.o main.a.o pairs.a.o param.a.o reads.a.o
utilities.a.o -o bsmap -lpthread
dbseq.a.o: In function `RefSeq::InitialIndex()':
dbseq.cpp:(.text+0x10a4): undefined reference to
`std::ctype<char>::_M_widen_init() const'
dbseq.a.o: In function `RefSeq::LoadNextSeq(std::basic_ifstream<char,
std::char_traits<char> >&)':
dbseq.cpp:(.text+0x12f1): undefined reference to
`std::ctype<char>::_M_widen_init() const'
collect2: ld returned 1 exit status
make: *** [bsmap] Error 1

What version of the product are you using? On what operating system?
I am using bsmap-1.02. My operating system is: 

$uname -a 
Linux tragus 2.6.28-15-generic #52-Ubuntu SMP Wed Sep 9 10:48:52 UTC 2009
x86_64 GNU/Linux

Please provide any additional information below.

Original issue reported on code.google.com by emily.y...@csiro.au on 20 Nov 2009 at 5:21

GoogleCodeExporter commented 9 years ago
please check the post

Original comment by sunnyt...@gmail.com on 5 Mar 2010 at 6:00