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Shicheng-Guo / rbiotools

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How to install shapeit4.2 #37

Open Shicheng-Guo opened 3 years ago

Shicheng-Guo commented 3 years ago 
git clone https://github.com/odelaneau/shapeit4.git
cd /home/sguo2/janssen4/bin/shapeit4

#install or module load htslib
#install or module load boost
module list
module load gcc/10.2.0 
module load boost/1.74.0
printenv | grep BOOST
module load bzip2

#COMPILER MODE C++11
CXX=g++ -std=c++11

#HTSLIB LIBRARY [SPECIFY YOUR OWN PATHS]
HTSLIB_INC=/home/sguo2/janssen4/bin/htslib-1.13
HTSLIB_LIB=/home/sguo2/janssen4/bin/htslib-1.13/libhts.a

#BOOST IOSTREAM & PROGRAM_OPTION LIBRARIES [SPECIFY YOUR OWN PATHS]
BOOST_INC=/cm/shared/apps/spack/cpu/opt/spack/linux-centos8-zen2/gcc-10.2.0/boost-1.74.0-hurj3p4dpe26k2rjwsxa6pubxopjioo7/include
BOOST_LIB_IO=/cm/shared/apps/spack/cpu/opt/spack/linux-centos8-zen2/gcc-10.2.0/boost-1.74.0-hurj3p4dpe26k2rjwsxa6pubxopjioo7/lib/libboost_iostreams.a
BOOST_LIB_PO=/cm/shared/apps/spack/cpu/opt/spack/linux-centos8-zen2/gcc-10.2.0/boost-1.74.0-hurj3p4dpe26k2rjwsxa6pubxopjioo7/lib/libboost_program_options.a