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ShixiangWang / DoAbsolute

:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
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Failed list got updated #1

Closed cailiangliang765 closed 5 years ago

cailiangliang765 commented 5 years ago

DoAbsolute(Seg = Seg3, platform = "SNP_6.0", copy.num.type = "total", results.dir = "myabsolutecnv3", nThread = 4, keepAllResult = TRUE, verbose = TRUE) o Spliting seg data of samples to different files... oo Processing sample 1 ... oo Processing sample 2 ... oo Processing sample 3 ... oo Processing sample 4 ... oo Processing sample 5 ... oo Processing sample 6 ... oo Processing sample 7 ... oo Processing sample 8 ... oo Processing sample 9 ... oo Processing sample 10 ... oo Processing sample 11 ... o Spliting seg data of samples done. o Running RunAbsolute... o RunAbsolute done. Retrieving results... o Running Absolute summarize... [1] "Failed list got updated 1" -[1] "Failed list got updated 2" -[1] "Failed list got updated 3" -[1] "Failed list got updated 4" -[1] "Failed list got updated 5" -[1] "Failed list got updated 6" -[1] "Failed list got updated 7" -[1] "Failed list got updated 8" -[1] "Failed list got updated 9" -[1] "Failed list got updated 10" -[1] "Failed list got updated 11" -Error in mode.ent[i] <- mtab[ix, "entropy"] : replacement has length zero

HengqiLiu commented 2 years ago

I have the same error as you, could you please tell me how to solve it.