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ShixiangWang / DoAbsolute

:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
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Error message: bad restore file magic number #12

Closed zhumengyan closed 4 years ago

zhumengyan commented 4 years ago

Thanks for your R package! I encounter an error, "Error message: bad restore file magic number (file may be corrupted) -- no data loaded". Could you give me some help ?

ShixiangWang commented 4 years ago

@zhumengyan I haven't encountered this situation before. Could you report your commands and output messages in details?

By the way, could you run the example shown here to see how it works?

zhumengyan commented 4 years ago

@zhumengyan I haven't encountered this situation before. Could you report your commands and output messages in details?

By the way, could you run the example shown here to see how it works?

Thanks for your quick reply! The example you provide runs properly.

The error of my data: ` [1] "Capping 0 segs at tCR = 5.0" [1] "Expected copy-ratio = 0.94973" [1] "Mode flag is NA, not generating plots. Sample has failed ABSOLUTE" [1] "Capping 0 segs at tCR = 5.0" [1] "Expected copy-ratio = 0.90187" [1] "Mode flag is NA, not generating plots. Sample has failed ABSOLUTE"

-> RunAbsolute done. Retrieving results... -> Checking result files... -> Checked. -> Removed previous temp review result directory. -> Running Absolute summarize... [1] "Failed list got updated 1" -[1] "Failed list got updated 2" -Error in mode.ent[i] <- mtab[ix, "entropy"] : replacement has length zero `

zhumengyan commented 4 years ago

I use CNVkit results instead of VarScan2 results, then it's OK