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ShixiangWang / sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
https://shixiangwang.github.io/sigminer/
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sig_tally报错 #367

Closed xuenannan closed 3 years ago

xuenannan commented 3 years ago

你好，我想用TCGA数据库中的头颈部癌找INDEL，在运行sig_tally这一步的时候，出现如下报错，请问怎么解决？ √<U+00A0>[2021-06-18 16:12:35]: Microhomology size calculated. √<U+00A0>[2021-06-18 16:12:35]: INDEL records classified into different components (types). √<U+00A0>[2021-06-18 16:12:35]: ID-28 matrix created. √<U+00A0>[2021-06-18 16:12:35]: ID-83 matrix created. x<U+00A0>[2021-06-18 16:12:35]: More than 2 regions counted, please report your data and code to developer! i<U+00A0>[2021-06-18 16:12:35]: 51.325 secs elapsed.

ShixiangWang commented 3 years ago

@xuenannan 应该是数据存在一些异常没有想到的情况。你可以提供下数据嘛，直接以txt上传到这里就行。

ShixiangWang commented 3 years ago

另外提问最好提供下你采用的代码哈和使用的sigminer版本哈，越容易重复就越好找问题。

谢谢。

ShixiangWang commented 3 years ago

@xuenannan 有进一步的反馈吗？

ShixiangWang commented 3 years ago

@xuenannan 可以提供下数据源吗？

ShixiangWang commented 3 years ago

@xuenannan 可以提供下产生该问题的报错数据吗？

ShixiangWang commented 3 years ago

I am closing this issue because no further feedback available. Free to reopen it if you want to discuss this issue at any time.