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ShixiangWang / sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
https://shixiangwang.github.io/sigminer/
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Error in RS analysis #444

Closed RuimeiL closed 9 months ago

RuimeiL commented 9 months ago

I have installed the sigminer by following: BiocManager::install("sigminer", dependencies = TRUE)

However, when I use the the function sig_tally(), it showed tally_rs <- sig_tally(rs)

tally_rs <- sig_tally(rs) ℹ [2023-12-04 14:13:04.516963]: Started. ✔ [2023-12-04 14:13:04.534494]: Successfully get RS list! [1] "Getting clustered info..." Error in (function (.x, .f, ..., .progress = FALSE) : ℹ In index: 1. Caused by error in purrr::map(): ℹ In index: 1. ℹ With name: PD26861a. Caused by error in loadNamespace(): ! 不存在叫‘copynumber’这个名字的程辑包

So what is the errors? how can I install the copynumber packages. Thany you for your time.

ShixiangWang commented 9 months ago

Install the copynumber by BiocManager::install("ShixiangWang/copynumber")

RuimeiL commented 9 months ago

It is ok now. Thank you!

ShixiangWang commented 9 months ago

You're welcome.