ShixiangWang
commented
11 months ago @RuimeiL Thanks for your question. It's quite easy. to customize the colors.
library(sigminer)
load(system.file("extdata", "toy_mutational_signature.RData",
package = "sigminer", mustWork = TRUE
))
# Show signature exposure
p1 <- show_sig_exposure(sig2)
p1
# palette means the colors for using
use_color_style("default")
# directly change the palette
show_sig_exposure(sig2, palette = c("black", "blue", "red"))
# as the result is a ggplot object
# modify with ggplot2 approach
p1 + ggplot2::scale_fill_brewer()
When visualizing signatures, the function show_sig_exposure(rs_sig, hide_samps = FALSE) is utilized to display the sample signatures. However, the documentation does not provide clear instructions for customizing colors.
option: style = c("default", "cosmic"), palette = use_color_style(style)
style
plot style, one of 'default' and 'cosmic', works when parameter set_gradient_color is FALSE. palette palette used to plot, default use a built-in palette according to parameter style.
I would like to inquire whether it is possible to customize colors. If so, how to define the color parameter? what is the method for achieving this customization?