v3 plan & roadmap - Githubissues

ShixiangWang / sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

https://shixiangwang.github.io/sigminer/

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v3 plan & roadmap #456

Open ShixiangWang opened 3 months ago

ShixiangWang commented 3 months ago

Target: A comprehensive mutational signature analysis platform

Data/Method Structure Design

[ ] Input data types (https://mp.weixin.qq.com/s/dVH0sbtGFo8_WooWtmxy5g)
[ ] Signature object and wrappers
...
[ ] Output data types

Features

[ ] Consistent data structures/classes
[ ] Consistent method/workflows
[ ] Modulized analysis and visualization support
[ ] Comprehensive/advanced algorithm implementation/plugins and supports
[ ] Shiny web application
[ ] Docker/docker-compose/singularity deployment
[ ] Pretty cli application