ShobiStassen
commented
2 years ago Hi, Sorry for the late reply, I am actually out of office next week but some suggestions for troubleshooting, do you have both igraph and python-igraph in your environment? It might help to uninstall python-igraph and igraph in case you had an old version of python-igraph that is not compatible with leidenalg. After that you can pip install igraph and perhaps first just check if you can import leidenlag, and then see if import parc works.
I'll try to get you a more comprehensive answer next week but I think there is some version issue related to igraph.
AttributeError Traceback (most recent call last) /tmp/ipykernel_2109246/3403208955.py in
----> 1 import parc
~/user_venv/lib/python3.7/site-packages/parc/init.py in
----> 1 from ._parc import PARC
~/user_venv/lib/python3.7/site-packages/parc/_parc.py in
6 from scipy.sparse import csr_matrix
7 import igraph as ig
----> 8 import leidenalg
9 import time
10 import umap
~/user_venv/lib/python3.7/site-packages/leidenalg/init.py in
33 not immediately available in :func:
leidenalg.find_partition. 34 """ ---> 35 from .functions import ALL_COMMS 36 from .functions import ALL_NEIGH_COMMS 37 from .functions import RAND_COMM~/user_venv/lib/python3.7/site-packages/leidenalg/functions.py in
21 return graph.__graph_as_cobject()
22
---> 23 from .VertexPartition import
24 from .Optimiser import
25
~/user_venv/lib/python3.7/site-packages/leidenalg/VertexPartition.py in
6 PY3 = (sys.version > '3')
7
----> 8 class MutableVertexPartition(_ig.VertexClustering):
9 """ Contains a partition of graph, derives from :class:
ig.VertexClustering. 10AttributeError: module 'igraph' has no attribute 'VertexClustering'