Closed ahill187 closed 4 months ago
Python 3.10 MacOSx
When calling run_umap_hnsw in the example in the README, I get the following error:
run_umap_hnsw
README
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) 16 graph = Parc1.knngraph_full() ---> 17 X_umap = Parc1.run_umap_hnsw(X, graph) 18 plt.scatter(X_umap[:, 0], X_umap[:, 1], c=Parc1.labels) 19 plt.show() File python3.10/site-packages/parc/_parc.py:595, in PARC.run_umap_hnsw(self, X_input, graph, n_components, alpha, negative_sample_rate, gamma, spread, min_dist, init_pos, random_state) 593 print('a,b, spread, dist', a, b, spread, min_dist) 594 t0 = time.time() --> 595 X_umap = simplicial_set_embedding(data=X_input, graph=graph, n_components=n_components, initial_alpha=alpha, 596 a=a, b=b, n_epochs=0, metric_kwds={}, gamma=gamma, 597 negative_sample_rate=negative_sample_rate, init=init_pos, 598 random_state=np.random.RandomState(random_state), metric='euclidean', 599 verbose=1) 600 return X_umap TypeError: simplicial_set_embedding() missing 3 required positional arguments: 'densmap', 'densmap_kwds', and 'output_dens'
Version Information
Error
When calling
run_umap_hnsw
in the example in theREADME
, I get the following error: